source(paste0(root.dir, 'scripts/myRLib.R'))
funcset <- readLines(paste0(root.dir, 'output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/sig_subset.set'))
funcset <- parseFuncSet(funcset)
funcset.names <- names(funcset)
xtyi.files <- strsplit('output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e+00.assoc.logistic:output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-01.assoc.logistic:output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-01.assoc.logistic:output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-02.assoc.logistic:output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-02.assoc.logistic:output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-03.assoc.logistic:output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-03.assoc.logistic:output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-04.assoc.logistic:output-direction_XT_YI/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-04.assoc.logistic', ':')[[1]]
ps <- strsplit('1,0.3,0.1,0.03,0.01,0.003,0.001,0.0003,0.0001', ',')[[1]]
inter.files <- strsplit('output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e+00.assoc.logistic:output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-01.assoc.logistic:output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-01.assoc.logistic:output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-02.assoc.logistic:output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-02.assoc.logistic:output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-03.assoc.logistic:output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-03.assoc.logistic:output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-04.assoc.logistic:output-run_step2/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-04.assoc.logistic', ':')[[1]]
prs.files <- strsplit('../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e+00.txt:../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-01.txt:../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-01.txt:../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-02.txt:../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-02.txt:../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-03.txt:../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-03.txt:../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-04.txt:../step1/output-run_step1/MAGNETIC_Serum.TG__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-04.txt', ':')[[1]]
for (i in 1:length(xtyi.files)) {
cat("##", funcset.names[i])
cat("
")
cat("
")
snp.subset <- funcset[[funcset.names[i]]]
# read I ~ SNP
prs <- read.table(paste0(root.dir, prs.files[i]), header = T)
prs$sid <- as.character(prs$sid)
prs.sub <- prs[prs$sid %in% snp.subset, ]
# read others
xtyi <- read.table(paste0(root.dir, xtyi.files[i]), header = T)
xtyi$SNP <- as.character(xtyi$SNP)
yt.xtyi <- xtyi[(xtyi$SNP %in% snp.subset) & (xtyi$SNP %in%
prs.sub$sid), ]
yt.xtyi.xt <- yt.xtyi[yt.xtyi$TEST == "ADD", ]
yt.xtyi.yi <- yt.xtyi[yt.xtyi$TEST == "PRS", ]
inter <- read.table(paste0(root.dir, inter.files[i]), header = T)
inter$SNP <- as.character(inter$SNP)
inter <- inter[inter$TEST == "ADDxPRS", ]
yt.inter <- inter[(inter$SNP %in% snp.subset) & (inter$SNP %in%
prs.sub$sid), ]
# order all rows
yt.xtyi.xt <- yt.xtyi.xt[order(yt.xtyi.xt$SNP), ]
yt.xtyi.yi <- yt.xtyi.yi[order(yt.xtyi.yi$SNP), ]
yt.inter <- yt.inter[order(yt.inter$SNP), ]
prs.sub <- prs.sub[order(prs.sub$sid), ]
# check direction
prs.sub$nt1 <- as.character(prs.sub$nt1)
yt.xtyi.xt$A1 <- as.character(yt.xtyi.xt$A1)
yt.inter$A1 <- as.character(yt.inter$A1)
if (sum(prs.sub$nt1 != yt.xtyi.xt$A1) != 0 | sum(prs.sub$nt1 !=
yt.inter$A1) != 0) {
print("Direction does not match. Exit!")
quit()
}
yt.xtyi.xt.mean.std <- getMeanStd(yt.xtyi.xt$SNP, yt.xtyi.xt$P,
yt.xtyi.xt$OR, "Y~Gi+I (Gi)")
yt.xtyi.yi.mean.std <- getMeanStd(yt.xtyi.yi$SNP, yt.xtyi.yi$P,
yt.xtyi.yi$OR, "Y~Gi+I (I)")
yt.inter.mean.std <- getMeanStd(yt.inter$SNP, yt.inter$P,
yt.inter$OR, "Y~Gi*I")
prs.sub.mean.std <- data.frame(SNP = prs.sub$sid, Mean = prs.sub$ldpred_beta,
Std = 0, Type = "I~Gi")
# create data frame for plot
df <- rbind(yt.xtyi.xt.mean.std, yt.xtyi.yi.mean.std, prs.sub.mean.std,
yt.inter.mean.std)
ratio <- max(1, nrow(yt.inter)/40)
cat
p <- ggplot(df) + geom_point(aes(x = SNP, y = Mean)) + geom_errorbar(aes(x = SNP,
ymin = Mean - 1.96 * Std, ymax = Mean + 1.96 * Std),
colour = "black", width = 0.1) + geom_hline(yintercept = 0,
color = "red") + facet_grid(. ~ Type, scales = "free_x") +
coord_flip() + theme(axis.text.x = element_text(angle = 90,
hjust = 1))
p2 <- ggplot(yt.inter) + geom_bar(aes(x = SNP, y = -log10(P)),
stat = "identity") + coord_flip() + ggtitle("Interaction P-value")
subchunkify(p, ratio)
subchunkify(p2, ratio)
cat("
")
inter.plus.gwas.pval <- cbind(yt.inter, yt.xtyi.xt$P)
colnames(inter.plus.gwas.pval) <- c(colnames(yt.inter), "GWAS.P")
pander(inter.plus.gwas.pval[order(inter.plus.gwas.pval$P,
decreasing = F), ])
cat("
")
cat("
")
}
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.667 | 2.256 | 0.02408 | 2.361e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.504 | 1.873 | 0.061 | 3.405e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.28 | 1.86 | 0.06288 | 8.749e-09 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.266 | 1.783 | 0.07464 | 1.304e-09 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 0.8035 | -1.664 | 0.09612 | 2.836e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.172 | 1.205 | 0.2281 | 1.374e-06 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.8578 | -1.163 | 0.2447 | 2.958e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.8611 | -1.141 | 0.2537 | 1.219e-09 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.8661 | -1.1 | 0.2712 | 5.112e-10 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.8719 | -1.05 | 0.2939 | 7.001e-11 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 0.8691 | -1.031 | 0.3026 | 1.002e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.138 | 0.9836 | 0.3253 | 5.93e-14 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.119 | 0.8637 | 0.3877 | 1.592e-12 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.894 | -0.8474 | 0.3968 | 1.945e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.297 | 0.8037 | 0.4216 | 3.355e-06 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 0.8942 | -0.789 | 0.4301 | 3.816e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9049 | -0.7088 | 0.4785 | 3.598e-05 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.097 | 0.7067 | 0.4797 | 5.962e-13 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9066 | -0.6948 | 0.4872 | 3.574e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 1.161 | 0.6833 | 0.4944 | 3.181e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.091 | 0.6686 | 0.5038 | 6.726e-13 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.921 | -0.635 | 0.5254 | 4.189e-05 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.108 | 0.6208 | 0.5347 | 9.71e-06 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.088 | 0.601 | 0.5478 | 1.418e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9226 | -0.5529 | 0.5803 | 1.444e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.093 | 0.5475 | 0.5841 | 3.191e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9304 | -0.4928 | 0.6222 | 1.284e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9393 | -0.4714 | 0.6373 | 2.272e-07 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.053 | 0.3567 | 0.7213 | 2.613e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.9466 | -0.3268 | 0.7438 | 3.286e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.042 | 0.3119 | 0.7551 | 1.233e-13 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 1.044 | 0.2912 | 0.7709 | 6.912e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9752 | -0.1541 | 0.8775 | 6.18e-06 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9785 | -0.1339 | 0.8935 | 7.912e-06 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 1.017 | 0.1272 | 0.8988 | 4.593e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9898 | -0.06436 | 0.9487 | 2.717e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.006 | 0.04105 | 0.9673 | 4.041e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9981 | -0.01143 | 0.9909 | 5.738e-06 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.686 | 2.365 | 0.01804 | 2.366e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.52 | 1.975 | 0.04824 | 3.394e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.22 | 1.544 | 0.1226 | 9.12e-09 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 0.823 | -1.533 | 0.1254 | 2.786e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.21 | 1.486 | 0.1372 | 1.357e-09 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.873 | -1.063 | 0.2877 | 2.893e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.8775 | -1.028 | 0.3039 | 1.237e-09 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.8812 | -0.9978 | 0.3184 | 5.229e-10 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.158 | 0.915 | 0.3602 | 9.688e-06 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.122 | 0.9016 | 0.3673 | 1.432e-06 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.8974 | -0.8544 | 0.3929 | 7.155e-11 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9008 | -0.8339 | 0.4044 | 4.042e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 0.8976 | -0.8199 | 0.4123 | 9.84e-06 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.8942 | -0.8191 | 0.4127 | 3.51e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.8963 | -0.8015 | 0.4228 | 3.49e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9025 | -0.8015 | 0.4229 | 1.972e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.104 | 0.7793 | 0.4358 | 5.876e-14 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.245 | 0.713 | 0.4758 | 3.325e-06 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.099 | 0.6945 | 0.4874 | 1.449e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9072 | -0.6902 | 0.4901 | 1.435e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.091 | 0.6843 | 0.4938 | 1.574e-12 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 0.9103 | -0.6825 | 0.4949 | 3.889e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9132 | -0.6413 | 0.5214 | 1.276e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 1.137 | 0.6046 | 0.5454 | 3.157e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.071 | 0.4907 | 0.6237 | 2.589e-05 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.064 | 0.4879 | 0.6256 | 5.929e-13 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.059 | 0.4499 | 0.6528 | 6.683e-13 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.064 | 0.3975 | 0.691 | 3.143e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9507 | -0.3926 | 0.6946 | 2.317e-07 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9653 | -0.2295 | 0.8185 | 2.787e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.969 | -0.194 | 0.8462 | 3.283e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 1.02 | 0.137 | 0.891 | 6.982e-06 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9867 | -0.09891 | 0.9212 | 3.972e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.012 | 0.09299 | 0.9259 | 1.228e-13 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9859 | -0.09012 | 0.9282 | 6.025e-06 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 1.011 | 0.08724 | 0.9305 | 4.543e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9899 | -0.06434 | 0.9487 | 7.72e-06 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 1.005 | 0.03113 | 0.9752 | 5.601e-06 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.567 | 2.43 | 0.01509 | 2.428e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.44 | 2.061 | 0.03933 | 3.435e-05 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.221 | 1.51 | 0.131 | 1.003e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.8861 | -1.172 | 0.2412 | 3.805e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 0.8947 | -1.068 | 0.2857 | 2.685e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.8886 | -1.051 | 0.2934 | 3.268e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.8909 | -1.027 | 0.3046 | 3.255e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9061 | -0.8518 | 0.3943 | 1.374e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9079 | -0.8329 | 0.4049 | 1.22e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.094 | 0.7909 | 0.429 | 2.535e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.089 | 0.7584 | 0.4482 | 1.435e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9278 | -0.7156 | 0.4742 | 2.855e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9279 | -0.7125 | 0.4761 | 1.296e-09 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.078 | 0.71 | 0.4777 | 1.045e-08 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9286 | -0.7069 | 0.4796 | 5.579e-10 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.076 | 0.6918 | 0.489 | 1.554e-09 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9375 | -0.6114 | 0.5409 | 2.026e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9366 | -0.5175 | 0.6048 | 2.93e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9485 | -0.4753 | 0.6346 | 3.79e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 0.957 | -0.4183 | 0.6757 | 1.233e-13 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.097 | 0.3806 | 0.7035 | 3.319e-06 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 1.064 | 0.3513 | 0.7254 | 3.139e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9643 | -0.3477 | 0.728 | 7.682e-11 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 0.9626 | -0.3327 | 0.7394 | 4.362e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 0.9689 | -0.2916 | 0.7706 | 9.695e-06 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.027 | 0.2543 | 0.7992 | 5.895e-14 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9727 | -0.2386 | 0.8114 | 7.222e-06 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9766 | -0.2227 | 0.8238 | 2.422e-07 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.024 | 0.221 | 0.8251 | 1.56e-12 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.017 | 0.1624 | 0.871 | 1.627e-06 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.013 | 0.09445 | 0.9248 | 3.186e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 0.9922 | -0.07469 | 0.9405 | 6.684e-13 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.009 | 0.07082 | 0.9435 | 3.057e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 1.008 | 0.06155 | 0.9509 | 5.414e-06 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 0.9957 | -0.04131 | 0.967 | 5.931e-13 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 1.004 | 0.03239 | 0.9742 | 7.452e-06 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9966 | -0.03216 | 0.9743 | 4.341e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9999 | -0.001157 | 0.9991 | 5.796e-06 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.281 | 2.112 | 0.03465 | 2.534e-05 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.173 | 1.943 | 0.05199 | 1.079e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.229 | 1.846 | 0.06492 | 3.527e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9083 | -1.366 | 0.1718 | 3.022e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9098 | -1.341 | 0.1799 | 3.011e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.923 | -1.233 | 0.2177 | 3.754e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.074 | 1.004 | 0.3155 | 2.511e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9358 | -0.9513 | 0.3414 | 3.618e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 0.9493 | -0.7818 | 0.4343 | 1.246e-13 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.947 | -0.7524 | 0.4518 | 1.119e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9489 | -0.7249 | 0.4685 | 1.264e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.046 | 0.6425 | 0.5206 | 1.336e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9568 | -0.5526 | 0.5805 | 2.971e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 0.9687 | -0.4759 | 0.6341 | 6.723e-13 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9664 | -0.475 | 0.6348 | 7.445e-06 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 0.9702 | -0.4533 | 0.6503 | 5.95e-13 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 0.9705 | -0.4492 | 0.6533 | 1.823e-06 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9725 | -0.4237 | 0.6718 | 5.802e-10 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9735 | -0.4041 | 0.6861 | 2.025e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9739 | -0.4027 | 0.6872 | 1.337e-09 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.019 | 0.277 | 0.7818 | 1.005e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.023 | 0.2683 | 0.7885 | 3.003e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9824 | -0.2631 | 0.7924 | 4.052e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 0.9845 | -0.2408 | 0.8097 | 2.596e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 0.9864 | -0.2043 | 0.8381 | 1.566e-12 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 0.9865 | -0.2023 | 0.8397 | 6.038e-14 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9842 | -0.1995 | 0.8419 | 3.077e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.014 | 0.1978 | 0.8432 | 5.241e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9765 | -0.1622 | 0.8712 | 3.347e-06 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 1.009 | 0.1429 | 0.8863 | 8.164e-11 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9936 | -0.09838 | 0.9216 | 2.977e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9938 | -0.09343 | 0.9256 | 2.475e-07 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9898 | -0.09325 | 0.9257 | 3.159e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.9939 | -0.09124 | 0.9273 | 1.178e-08 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 0.9947 | -0.07885 | 0.9372 | 1.754e-09 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 1.006 | 0.07236 | 0.9423 | 7.59e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 1.003 | 0.03857 | 0.9692 | 5.878e-06 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 1.002 | 0.02817 | 0.9775 | 5.517e-06 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.127 | 1.988 | 0.0468 | 1.123e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.16 | 1.728 | 0.08396 | 2.609e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.134 | 1.54 | 0.1237 | 3.61e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.927 | -1.463 | 0.1434 | 2.954e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.928 | -1.443 | 0.1492 | 2.94e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.939 | -1.226 | 0.2202 | 3.588e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.057 | 1.064 | 0.2872 | 2.545e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9541 | -0.9823 | 0.3259 | 3.864e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 0.9549 | -0.9378 | 0.3483 | 1.259e-13 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 0.9672 | -0.6769 | 0.4985 | 6.813e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 0.9679 | -0.6624 | 0.5077 | 6.016e-13 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 0.9685 | -0.652 | 0.5144 | 1.869e-06 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9683 | -0.6114 | 0.5409 | 7.544e-06 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9697 | -0.5783 | 0.563 | 1.069e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9452 | -0.5205 | 0.6027 | 3.399e-06 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.026 | 0.5178 | 0.6046 | 1.049e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9729 | -0.5172 | 0.605 | 1.213e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9717 | -0.4868 | 0.6264 | 2.908e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 0.9778 | -0.4551 | 0.6491 | 1.594e-12 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 0.9779 | -0.4532 | 0.6504 | 6.191e-14 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 0.9786 | -0.4381 | 0.6613 | 1.814e-09 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.979 | -0.4289 | 0.668 | 1.217e-08 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.022 | 0.4175 | 0.6763 | 1.272e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 1.019 | 0.3977 | 0.6908 | 8.257e-11 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.021 | 0.388 | 0.698 | 5.707e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.022 | 0.3529 | 0.7242 | 2.92e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9861 | -0.287 | 0.7741 | 1.98e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.013 | 0.2773 | 0.7815 | 2.607e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9787 | -0.2674 | 0.7891 | 3.171e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 1.016 | 0.2633 | 0.7923 | 7.819e-06 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9872 | -0.258 | 0.7964 | 3.899e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9851 | -0.2535 | 0.7999 | 3.12e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 1.014 | 0.2369 | 0.8127 | 6.042e-06 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9889 | -0.2322 | 0.8164 | 5.793e-10 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.011 | 0.2315 | 0.8169 | 3.139e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.99 | -0.2079 | 0.8353 | 1.339e-09 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 1.011 | 0.1829 | 0.8549 | 5.681e-06 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 1.001 | 0.02685 | 0.9786 | 2.454e-07 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.106 | 1.819 | 0.06889 | 1.141e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.128 | 1.542 | 0.123 | 2.663e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.109 | 1.384 | 0.1665 | 3.709e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9428 | -1.243 | 0.2141 | 3.714e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9447 | -1.194 | 0.2326 | 3.076e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9453 | -1.179 | 0.2384 | 3.057e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 0.9557 | -0.9976 | 0.3185 | 1.272e-13 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.049 | 0.9963 | 0.3191 | 2.532e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9578 | -0.8882 | 0.3744 | 7.545e-06 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.039 | 0.8385 | 0.4018 | 1.099e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9639 | -0.8353 | 0.4035 | 4.074e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 0.964 | -0.8073 | 0.4195 | 6.957e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 0.9643 | -0.8001 | 0.4237 | 6.132e-13 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9345 | -0.6745 | 0.5 | 3.525e-06 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9678 | -0.6687 | 0.5037 | 1.063e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 0.9722 | -0.6241 | 0.5326 | 1.847e-06 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9669 | -0.619 | 0.5359 | 2.784e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9707 | -0.6092 | 0.5424 | 1.21e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.025 | 0.5645 | 0.5724 | 2.694e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 0.9747 | -0.5642 | 0.5726 | 6.383e-14 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.033 | 0.5617 | 0.5743 | 2.895e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 0.976 | -0.5329 | 0.5941 | 1.641e-12 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 0.9768 | -0.5168 | 0.6053 | 1.835e-09 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.9783 | -0.4829 | 0.6292 | 1.225e-08 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.023 | 0.4662 | 0.6411 | 5.771e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 1.019 | 0.4214 | 0.6734 | 8.301e-11 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 1.016 | 0.2893 | 0.7724 | 7.97e-06 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9793 | -0.2858 | 0.775 | 3.209e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.013 | 0.2803 | 0.7793 | 1.227e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 1.014 | 0.2629 | 0.7926 | 6.157e-06 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9912 | -0.1995 | 0.8419 | 5.841e-10 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9916 | -0.1911 | 0.8485 | 1.349e-09 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9916 | -0.1827 | 0.855 | 3.89e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 1.009 | 0.1729 | 0.8627 | 5.791e-06 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9914 | -0.1568 | 0.8754 | 3.104e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.993 | -0.1562 | 0.8759 | 1.936e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.005 | 0.1241 | 0.9013 | 3.364e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9997 | -0.007641 | 0.9939 | 2.393e-07 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.107 | 1.8 | 0.07183 | 1.154e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.122 | 1.431 | 0.1526 | 2.698e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.104 | 1.282 | 0.1998 | 3.778e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9452 | -1.132 | 0.2576 | 7.502e-06 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 0.9491 | -1.12 | 0.2628 | 1.3e-13 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9471 | -1.114 | 0.2652 | 3.801e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.052 | 1.064 | 0.2874 | 1.098e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.05 | 0.9927 | 0.3208 | 2.51e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 0.9556 | -0.9759 | 0.3291 | 7.172e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 0.9557 | -0.9723 | 0.3309 | 6.318e-13 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9589 | -0.9264 | 0.3542 | 4.19e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9599 | -0.8153 | 0.4149 | 1.074e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.049 | 0.8105 | 0.4176 | 2.888e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9617 | -0.7977 | 0.425 | 3.171e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9623 | -0.7842 | 0.4329 | 3.15e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9618 | -0.7753 | 0.4381 | 1.225e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.958 | -0.7721 | 0.4401 | 2.782e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 0.9665 | -0.7341 | 0.4629 | 6.594e-14 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 0.9685 | -0.6869 | 0.4921 | 1.889e-09 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 0.9696 | -0.6657 | 0.5056 | 1.873e-06 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9353 | -0.6476 | 0.5172 | 3.661e-06 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.9711 | -0.6282 | 0.5299 | 1.261e-08 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 0.972 | -0.6078 | 0.5433 | 1.698e-12 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.024 | 0.5292 | 0.5967 | 2.746e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.025 | 0.479 | 0.6319 | 5.794e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 1.022 | 0.4778 | 0.6328 | 8.479e-11 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.011 | 0.2375 | 0.8123 | 1.244e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9898 | -0.1379 | 0.8903 | 3.217e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 1.008 | 0.1361 | 0.8918 | 7.949e-06 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9926 | -0.1318 | 0.8952 | 3.074e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9945 | -0.1154 | 0.9081 | 3.971e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 1.006 | 0.1075 | 0.9144 | 6.134e-06 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9955 | -0.1024 | 0.9184 | 3.485e-05 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9957 | -0.09423 | 0.9249 | 6.001e-10 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9959 | -0.09146 | 0.9271 | 1.38e-09 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9976 | -0.05275 | 0.9579 | 1.922e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9981 | -0.04071 | 0.9675 | 2.397e-07 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 1.001 | 0.01358 | 0.9892 | 5.778e-06 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.107 | 1.702 | 0.08881 | 1.163e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.137 | 1.503 | 0.1329 | 2.678e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.118 | 1.357 | 0.1748 | 3.786e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9308 | -1.356 | 0.1751 | 7.446e-06 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 0.9383 | -1.282 | 0.1998 | 1.306e-13 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.061 | 1.188 | 0.2347 | 1.086e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 0.9432 | -1.182 | 0.237 | 7.28e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 0.9435 | -1.177 | 0.239 | 6.414e-13 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9502 | -1.059 | 0.2897 | 4.393e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9445 | -0.9667 | 0.3337 | 2.757e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.06 | 0.9358 | 0.3494 | 2.876e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9511 | -0.9337 | 0.3505 | 1.096e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9528 | -0.9296 | 0.3526 | 3.941e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 0.9554 | -0.9238 | 0.3556 | 6.737e-14 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9519 | -0.9193 | 0.3579 | 1.249e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 0.9555 | -0.9168 | 0.3592 | 1.883e-09 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 0.958 | -0.8698 | 0.3844 | 1.854e-06 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.958 | -0.8637 | 0.3878 | 1.255e-08 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.043 | 0.8034 | 0.4218 | 2.508e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 0.9641 | -0.7379 | 0.4606 | 1.731e-12 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 1.029 | 0.5895 | 0.5556 | 8.577e-11 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9478 | -0.4873 | 0.6261 | 3.751e-06 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9779 | -0.4267 | 0.6696 | 3.331e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9787 | -0.4119 | 0.6804 | 3.309e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.02 | 0.4094 | 0.6823 | 2.836e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.021 | 0.3805 | 0.7036 | 5.615e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9838 | -0.3462 | 0.7292 | 3.575e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9843 | -0.2619 | 0.7934 | 3.106e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.013 | 0.2488 | 0.8035 | 1.246e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9824 | -0.225 | 0.822 | 3.273e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9943 | -0.1128 | 0.9102 | 4.15e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 1.005 | 0.1056 | 0.9159 | 1.938e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9945 | -0.09208 | 0.9266 | 5.879e-06 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 1.004 | 0.08661 | 0.931 | 1.399e-09 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 1.004 | 0.08527 | 0.932 | 6.085e-10 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 1.002 | 0.02874 | 0.9771 | 8.078e-06 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 1.001 | 0.01095 | 0.9913 | 2.389e-07 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9999 | -0.002336 | 0.9981 | 6.241e-06 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.115 | 1.704 | 0.08831 | 1.169e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9217 | -1.445 | 0.1485 | 7.408e-06 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 0.9267 | -1.438 | 0.1505 | 1.3e-13 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.137 | 1.407 | 0.1593 | 2.637e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 0.9307 | -1.364 | 0.1727 | 7.275e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 0.9311 | -1.357 | 0.1749 | 6.41e-13 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.114 | 1.236 | 0.2165 | 3.749e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 0.9381 | -1.206 | 0.2279 | 1.81e-09 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.066 | 1.197 | 0.2315 | 1.079e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 0.9411 | -1.152 | 0.2494 | 1.795e-06 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9303 | -1.147 | 0.2512 | 2.719e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.9412 | -1.142 | 0.2535 | 1.208e-08 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 0.9429 | -1.118 | 0.2634 | 6.762e-14 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9499 | -0.9982 | 0.3182 | 4.541e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.066 | 0.9677 | 0.3332 | 2.912e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9473 | -0.9463 | 0.344 | 1.116e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9484 | -0.9266 | 0.3542 | 1.272e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 0.9539 | -0.8929 | 0.3719 | 1.74e-12 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9546 | -0.8348 | 0.4039 | 4.021e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 1.039 | 0.7506 | 0.4529 | 8.435e-11 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.039 | 0.6772 | 0.4983 | 2.548e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9803 | -0.3934 | 0.694 | 3.593e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.02 | 0.3916 | 0.6953 | 2.903e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9762 | -0.3742 | 0.7083 | 3.177e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9594 | -0.3524 | 0.7246 | 3.792e-06 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9731 | -0.3257 | 0.7447 | 3.282e-05 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 1.016 | 0.3169 | 0.7513 | 5.975e-10 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 1.016 | 0.3117 | 0.7552 | 1.383e-09 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.015 | 0.269 | 0.788 | 1.243e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.015 | 0.2594 | 0.7953 | 5.433e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9858 | -0.2557 | 0.7982 | 3.431e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9866 | -0.2409 | 0.8097 | 3.407e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 1.01 | 0.1866 | 0.8519 | 2.373e-07 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 1.008 | 0.1599 | 0.873 | 1.945e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 1.009 | 0.1396 | 0.889 | 8.18e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 1.007 | 0.1067 | 0.9151 | 6.332e-06 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9985 | -0.02742 | 0.9781 | 4.256e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 1.001 | 0.02031 | 0.9838 | 5.972e-06 |